PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024260-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB_related
Protein Properties Length: 84aa    MW: 9538.66 Da    PI: 9.5859
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024260-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.81.9e-111457344
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                        +WT+e  +++ +a +++ ++   +W  +a+ +g g+t++++k ++
  WALNUT_00024260-RA 14 SWTAEQNKRFEKALALYDKDtpdRWQNVAKAVG-GKTAEEVKRHY 57
                        7********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-6661IPR009057Homeodomain-like
PROSITE profilePS5129310.5771065IPR017884SANT domain
SMARTSM007171.1E-91163IPR001005SANT/Myb domain
SuperFamilySSF466896.73E-141369IPR009057Homeodomain-like
CDDcd001674.54E-81461No hitNo description
PfamPF002494.5E-91457IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MASSSLNKQN SSSSWTAEQN KRFEKALALY DKDTPDRWQN VAKAVGGKTA EEVKRHYEIL  60
LEDLRHIESG RIPIPKYRSS GQSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-33181177RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003537885.23e-44PREDICTED: protein RADIALIS-like 4
SwissprotQ1A1732e-36RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A0B2RZB14e-44A0A0B2RZB1_GLYSO; DnaJ like subfamily C member 2
TrEMBLI1LJC84e-44I1LJC8_SOYBN; Uncharacterized protein
STRINGGLYMA11G12460.11e-43(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.18e-36RAD-like 6